PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018697
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 210aa    MW: 22543.3 Da    PI: 8.3929
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018697genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260927.2e-292104198
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C ++Cvl+  +     p++q +++ +++k+FG+s +l++++++p+ +r+++++sl++eA+ r+ +Pv+Gavg++++ +++++q++++
  Lus10018697   2 SCNGCRVLRKGCGENCVLRSSLqwiptPQAQGNATLFLAKFFGRSDLLSFISSVPDPQRPALFQSLLFEACGRTVNPVNGAVGLLWSRNWHVCQAAVD 99 
                  6************************999999*****************************************************************99 PP

       DUF260  94 lallk 98 
                  ++l++
  Lus10018697 100 TVLAG 104
                  88775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.2581107IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSCNGCRVLR KGCGENCVLR SSLQWIPTPQ AQGNATLFLA KFFGRSDLLS FISSVPDPQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWSRN WHVCQAAVDT VLAGGSLHPL PGIAPPNFDE  120
SDDSFSAAGF AAHQLRPAIL AITGGNQNLS SSSSTSEYRR RHNASLVGGG NERRINNRDV  180
RASFFAEESE TTTFESTGGD RKKLLNLFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068238.11e-88PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SZE85e-61LBD39_ARATH; LOB domain-containing protein 39
SwissprotQ9FN115e-61LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A067LAV81e-88A0A067LAV8_JATCU; Uncharacterized protein
STRINGPOPTR_0002s12020.15e-84(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-61LOB domain-containing protein 39